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Reference panel15 June 2023Mamana Mbiyavanga
1KG NYGC 30x
1000 Genomes Project, NYGC 30x high-coverage re-sequencing. 3,202 samples, 31.3M variants, hg38. Good for non-African ancestry imputation. ALL-population allele frequencies only in this release; per-superpopulation breakdown coming later.
3,202
Samples
31.3M
Variants
hg38
Build
Reference panel information
- Chromosomes
- 1-22
- Biallelic SNPs
- 31,333,156
- Samples
- 3,202
- Haplotypes
- 6,404
Sample size by population
African regions
- East Africa (99)
- West Africa (604)
Africa
- ESN (149)
- GWD (178)
- LWK (99)
- MSL (99)
- YRI (178)
Europe
- CEU (179)
- FIN (99)
- GBR (91)
- IBS (157)
- TSI (107)
Asia
- BEB (131)
- CDX (93)
- CHB (103)
- CHS (163)
- GIH (103)
- ITU (107)
- JPT (104)
- KHV (122)
- PJL (146)
- STU (114)
North America
- ACB (116)
- ASW (74)
- MXL (97)
- PUR (139)
South America
- CLM (132)
- PEL (122)
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Populations
Global (5 superpopulations: AFR, AMR, EAS, EUR, SAS).
How it works
- Sign in (or register) for a FedImpute account.
- Prepare your GWAS genotypes as VCF on the GRCh38 (hg38) build (or lift over at submission).
- Start a New Imputation Job and select this panel.
- FedImpute phases your genotypes (Eagle) and imputes against the panel (Minimac4).
- Download your phased and imputed genotypes as VCF.